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1

Mission Impossible: Find a Random Pseudorandom Number Generator

Vattulainen, I., Ala-Nissila, T.

Journal:

Computers in Physics

Year:

1995

File:

PDF, 1.57 MB

1995

2

Publisher Correction: Molecular mechanisms of Charcot-Marie-Tooth neuropathy linked to mutations in human myelin protein P2

Ruskamo, Salla, Nieminen, Tuomo, Kristiansen, Cecilie K., Vatne, Guro H., Baumann, Anne, Hallin, Erik I., Raasakka, Arne, Joensuu, Päivi, Bergmann, Ulrich, Vattulainen, Ilpo, Kursula, Petri

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 665 KB

english, 2018

3

Defect-Mediated Trafficking across Cell Membranes: Insights from in Silico Modeling

Gurtovenko, Andrey A., Anwar, Jamshed, Vattulainen, Ilpo

Journal:

Chemical Reviews

Year:

2010

Language:

english

File:

PDF, 5.48 MB

english, 2010

4

Effects of carbon nanoparticles on lipid membranes: a molecular simulation perspective

Monticelli, Luca, Salonen, Emppu, Ke, Pu Chun, Vattulainen, Ilpo

Journal:

Year:

2009

Language:

english

File:

PDF, 2.69 MB

english, 2009

5

Measurements of organochloro compounds at a metal reclamation plant

J.-P. Aittola, J. Paasivirta, A. Vattulainen

Journal:

Year:

1993

Language:

english

File:

PDF, 335 KB

english, 1993

6

Interfacial Tension and Surface Pressure of High Density Lipoprotein, Low Density Lipoprotein, and Related Lipid Droplets

Ollila, O. H. Samuli, Lamberg, Antti, Lehtivaara, Maria, Koivuniemi, Artturi, Vattulainen, Ilpo

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 686 KB

english, 2012

7

Effects of DPH on DPPC−Cholesterol Membranes with Varying Concentrations of Cholesterol: From Local Perturbations to Limitations in Fluorescence Anisotropy Experiments

Fraňová, Miroslava, Repáková, Jarmila, Čapková, Pavla, Holopainen, Juha M., Vattulainen, Ilpo

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 2.51 MB

english, 2010

8

Integration schemes for dissipative particle dynamics simulations: From softly interacting systems towards hybrid models

Vattulainen, I., Karttunen, M., Besold, G., Polson, J. M.

Journal:

The Journal of Chemical Physics

Year:

2002

Language:

english

File:

PDF, 401 KB

english, 2002

9

doGlycans – Tools for Preparing Carbohydrate Structures for Atomistic Simulations of Glycoproteins, Glycolipids, and Carbohydrate Polymers with GROMACS

Danne, Reinis, Poojari, Chetan, Martinez-Seara, Hector, Rissanen, Sami, Lolicato, Fabio, Rog, Tomasz, Vattulainen, Ilpo

Journal:

Journal of Chemical Information and Modeling

Year:

2017

Language:

english

File:

PDF, 1.41 MB

english, 2017

10

Association of Antipsychotic Polypharmacy vs Monotherapy With Psychiatric Rehospitalization Among Adults With Schizophrenia

Tiihonen, Jari, Taipale, Heidi, Mehtälä, Juha, Vattulainen, Pia, Correll, Christoph U., Tanskanen, Antti

Journal:

JAMA Psychiatry

Year:

2019

File:

PDF, 518 KB

2019

11

Understanding the Role of Lipids in Signaling Through Atomistic and Multiscale Simulations of Cell Membranes

Manna, Moutusi, Nieminen, Tuomo, Vattulainen, Ilpo

Journal:

Annual Review of Biophysics

Year:

2019

File:

PDF, 3.55 MB

2019

12

No Effect on Infant Birth Weight and Head Circumference After Exposure to Interferon Beta Prior to Or During Pregnancy: A Register-Based Cohort Study in Finland and Sweden Among Women with Multiple Sclerosis

Vattulainen, Pia, Burkill, Sarah, Geissbuehler, Yvonne, SabidÃ³, Meritxell, Popescu, Catrinel, Suzart-Woischnik, Kiliana, Myhr, Kjell-Morten, Montgomery, Scott, Korhonen, Pasi

Journal:

Multiple Sclerosis and Related Disorders

Year:

2020

File:

PDF, 132 KB

2020

13

Multiscale simulations of domain formation in single-component phospholipid bilayers

Teemu Murtola, Tomasz Róg, Emma Falck, Mikko Karttunen, Ilpo Vattulainen

Journal:

Chemistry and Physics of Lipids

Year:

2007

Language:

english

File:

PDF, 50 KB

english, 2007

14

Transport and effects of chlorpromazine on POPC and POPS lipid bilayers

Emppu Salonen, Kimmo Heikkilä, Ilpo Vattulainen

Journal:

Chemistry and Physics of Lipids

Year:

2007

Language:

english

File:

PDF, 54 KB

english, 2007

15

Cholesterol methyl groups—molecular fossils?

Sanja Pöyry, Tomasz Róg, Mikko Karttunen, Ilpo Vattulainen

Journal:

Chemistry and Physics of Lipids

Year:

2007

Language:

english

File:

PDF, 57 KB

english, 2007

16

Molecular dynamics simulations of neutral lipids found in lipoproteins

Anette Hall, Jarmila Repakova, Ilpo Vattulainen

Journal:

Chemistry and Physics of Lipids

Year:

2007

Language:

english

File:

PDF, 48 KB

english, 2007

17

Long-range interactions and parallel scalability in molecular simulations

Michael Patra, Marja T. Hyvönen, Emma Falck, Mohsen Sabouri-Ghomi, Ilpo Vattulainen, Mikko Karttunen

Journal:

Computer Physics Communications

Year:

2007

Language:

english

File:

PDF, 230 KB

english, 2007

18

Structural effects of small molecules on phospholipid bilayers investigated by molecular simulations

Bryan W. Lee, Roland Faller, Amadeu K. Sum, Ilpo Vattulainen, Michael Patra, Mikko Karttunen

Journal:

Fluid Phase Equilibria

Year:

2004

Language:

english

File:

PDF, 182 KB

english, 2004

19

Structural effects of small molecules on phospholipid bilayers investigated by molecular simulations

Bryan W. Lee, Roland Faller, Amadeu K. Sum, Ilpo Vattulainen, Michael Patra, Mikko Karttunen

Journal:

Fluid Phase Equilibria

Year:

2005

Language:

english

File:

PDF, 183 KB

english, 2005

20

National repository initiatives in Europe

Pentti Vattulainen

Journal:

Library Collections, Acquisitions, and Technical Services

Year:

2004

Language:

english

File:

PDF, 133 KB

english, 2004

21

Diffusion and mobility of interacting particles on stepped surfaces

M. Mašı&amp, #x0301, n, I. Vattulainen, T. Ala-Nissila, Z. Chvoj

Journal:

Surface Science

Year:

2003

Language:

english

File:

PDF, 293 KB

english, 2003

22

Diffusion and mobility of interacting particles on stepped surfaces along the ledges

M. Mašı́n, I. Vattulainen, T. Ala-Nissila, Z. Chvoj

Journal:

Surface Science

Year:

2004

Language:

english

File:

PDF, 307 KB

english, 2004

23

Non-equilibrium effects in profile spreading on stepped surfaces

M. Mašı&amp, #x0301, n, I. Vattulainen, T. Ala-Nissila, Z. Chvoj

Journal:

Surface Science

Year:

2003

Language:

english

File:

PDF, 285 KB

english, 2003

24

Insights into activation and RNA binding of trp RNA-binding attenuation protein (TRAP) through all-atom simulations

Teemu Murtola, Ilpo Vattulainen, Emma Falck

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 987 KB

english, 2008

25

Real-Time Translocation of Fullerene Reveals Cell Contraction

Emppu Salonen, Sijie Lin, Michelle L. Reid, Marcus Allegood, Xi Wang, Apparao M. Rao, Ilpo Vattulainen, Pu Chun Ke

Journal:

Year:

2008

Language:

english

File:

PDF, 824 KB

english, 2008

26

Thermometry of gas layers in thermal plasma CVD by pulsed-laser Rayleigh scattering

J. Larjo, J. Vattulainen, R. Hernberg

Journal:

Applied Physics B: Lasers and Optics

Year:

1996

Language:

english

File:

PDF, 509 KB

english, 1996

27

Follow-up of asbestosis patients and predictors for radiographic progression

Panu Oksa, Matti S. Huuskonen, Jorma Järvisalo, Matti Klockars, Anders Zitting, Hannu Suoranta, Antti Tossavainen, Kimmo Vattulainen, Pekka Laippala

Journal:

International Archives of Occupational and Environmental Health

Year:

1998

Language:

english

File:

PDF, 248 KB

english, 1998

28

Simulation study of lateral diffusion in lipid-sterol bilayer mixtures

J.M. Polson, I. Vattulainen, H. Zhu, M.J. Zuckermann

Journal:

The European Physical Journal E

Year:

2001

Language:

english

File:

PDF, 317 KB

english, 2001

29

A comparative study of some pseudorandom number generators

I. Vattulainen, K. Kankaala, J. Saarinen, T. Ala-Nissila

Journal:

Computer Physics Communications

Year:

1995

Language:

english

File:

PDF, 1.42 MB

english, 1995

30

Effect of replacement of cholesterol hydroxyl group by ketone group

Tomasz Róg, Lorna M. Stimson, Marta Pasenkiewicz-Gierula, Ilpo Vattulainen, Mikko Karttunen

Journal:

Chemistry and Physics of Lipids

Year:

2007

Language:

english

File:

PDF, 65 KB

english, 2007

31

Differences between lateral pressure profiles of one-component and many-component lipid membranes

Samuli Ollila, Perttu Niemelä, Tomasz Róg, Marja T. Hyvönen, Mikko Karttunen, Ilpo Vattulainen

Journal:

Chemistry and Physics of Lipids

Year:

2007

Language:

english

File:

PDF, 58 KB

english, 2007

32

Molecular dynamics study of β-sheet in a lipoprotein-like lipid particle containing cholesteryl esters and POPCs

Artturi Koivuniemi, Petri T. Kovanen, Ilpo Vattulainen, Marja T. Hyvönen

Journal:

Chemistry and Physics of Lipids

Year:

2007

Language:

english

File:

PDF, 54 KB

english, 2007

33

Membrane properties and sterol interactions of sphingomyelin head group analogs

Anders Björkbom, Tomasz Róg, Mayuko Kurita, Shou Yamaguchi, Max Lönnfors, Thomas K.M. Nyholm, Ilpo Vattulainen, Shigeo Katsumura, J. Peter Slotte

Journal:

Chemistry and Physics of Lipids

Year:

2010

Language:

english

File:

PDF, 44 KB

english, 2010

34

How would you integrate the equations of motion in dissipative particle dynamics simulations?

P Nikunen, M Karttunen, I Vattulainen

Journal:

Computer Physics Communications

Year:

2003

Language:

english

File:

PDF, 299 KB

english, 2003

35

BODIPY-Cholesterol: A New Tool to Visualize Sterol Trafficking in Living Cells and Organisms

Maarit Hölttä-Vuori, Riikka-Liisa Uronen, Jarmila Repakova, Emppu Salonen, Ilpo Vattulainen, Pertti Panula, Zaiguo Li, Robert Bittman, Elina Ikonen

Journal:

Year:

2008

Language:

english

File:

PDF, 1.13 MB

english, 2008

36

Cholesterol modulates glycolipid conformation and receptor activity

Lingwood, Daniel, Binnington, Beth, Róg, Tomasz, Vattulainen, Ilpo, Grzybek, Michal, Coskun, Ünal, Lingwood, Clifford A, Simons, Kai

Journal:

Nature Chemical Biology

Year:

2011

Language:

english

File:

PDF, 1.06 MB

english, 2011

37

Influence of hydrodynamics on many-particle diffusion in 2D colloidal suspensions

E. Falck, J.M. Lahtinen, I. Vattulainen, T. Ala-Nissila

Journal:

The European Physical Journal E

Year:

2004

Language:

english

File:

PDF, 212 KB

english, 2004

38

Dielectrophoresis of nanocolloids: A molecular dynamics study

E. Salonen, E. Terama, I. Vattulainen, M. Karttunen

Journal:

The European Physical Journal E

Year:

2005

Language:

english

File:

PDF, 213 KB

english, 2005

39

Revealing structural and dynamical properties of high density lipoproteins through molecular simulations

Koivuniemi, Artturi, Vattulainen, Ilpo

Journal:

Year:

2012

Language:

english

File:

PDF, 526 KB

english, 2012

40

Novel method for in-flight particle temperature and velocity measurements in plasma spraying using a single CCD camera

J. Vattulainen, E. Hämäläinen, R. Hernberg, P. Vuoristo, T. Mäntylä

Journal:

Journal of Thermal Spray Technology

Year:

2001

Language:

english

File:

PDF, 179 KB

english, 2001

41

Molecular Dynamics Simulations Reveal Fundamental Role of Water As Factor Determining Affinity of Binding of β-Blocker Nebivolol to β2-Adrenergic Receptor

Kaszuba, Karol, Róg, Tomasz, Bryl, Krzysztof, Vattulainen, Ilpo, Karttunen, Mikko

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 581 KB

english, 2010

42

Lessons from the biophysics of interfaces: Lung surfactant and tear fluid

Antti H. Rantamäki, Jelena Telenius, Artturi Koivuniemi, Ilpo Vattulainen, Juha M. Holopainen

Journal:

Progress in Retinal and Eye Research

Year:

2011

Language:

english

File:

PDF, 919 KB

english, 2011

43

Strong preferences of dopamine and l-dopa towards lipid head group: importance of lipid composition and implication for neurotransmitter metabolism

Adam Orłowski, Michał Grzybek, Alex Bunker, Marta Pasenkiewicz-Gierula, Ilpo Vattulainen, Pekka T. Männistö, Tomasz Róg

Journal:

Journal of Neurochemistry

Year:

2012

Language:

english

File:

PDF, 894 KB

english, 2012

44

Analysis of pollutant chemistry in combustion by in situ pulsed photoacoustic laser diagnostics

Stenberg, Jari, Hernberg, Rolf, Vattulainen, Juha

Journal:

Year:

1995

Language:

english

File:

PDF, 201 KB

english, 1995

45

Experimental Determination of SO2, C2H2, and O2 UV Absorption Cross Sections at Elevated Temperatures and Pressures

Vattulainen, J., Wallenius, L., Stenberg, J., Hernberg, R., Linna, V.

Journal:

Applied Spectroscopy

Year:

1997

Language:

english

File:

PDF, 197 KB

english, 1997

46

Interaction of C70 fullerene with the Kv1.2 potassium channel

Monticelli, Luca, Barnoud, Jonathan, Orlowski, Adam, Vattulainen, Ilpo

Journal:

Physical Chemistry Chemical Physics

Year:

2012

Language:

english

File:

PDF, 3.68 MB

english, 2012

47

Serum Cholesterol Trends among Members of the Finnish Parliament

Seppo T. Nikkari, Panu Oksa, Kimmo Vattulainen, Antti Kohvakka, Pekka Puska, Pekka Roto

Journal:

Preventive Medicine

Year:

1999

Language:

english

File:

PDF, 38 KB

english, 1999

48

Non-equilibrium surface diffusion in the OW(110) system

I. Vattulainen, J. Merikoski, T. Ala-Nissila, S.C. Ying

Journal:

Surface Science

Year:

1996

Language:

english

File:

PDF, 449 KB

english, 1996

49

Metal reclamation produces sulphur analogues of toxic dioxins and furans

S. Sinkkonen, A. Vattulainen, J.-P. Aittola, J. Paasivirta, J. Tarhanen, M. Lahtiperä

Journal:

Year:

1994

Language:

english

File:

PDF, 429 KB

english, 1994

50

Chlorohydrocarbons, PCB congeners, polychlorodioxins, furans and dibenzothiophenes in pine needles in the vicinity of a metal reclamation plant

S. Sinkkonen, T. Rantio, A. Vattulainen, J.-P. Aittola, J. Paasivirta, M. Lahtiperä

Journal:

Year:

1995

Language:

english

File:

PDF, 724 KB

english, 1995

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